Coronavirus research applications
- Liu et al. (2020)
A benchmarking study of SARS-CoV-2 whole-genome sequencing protocols using COVID-19 patient samples - Itokawa, K., Sekizuka, T., Hashino, M., Tanaka, R., and Kuroda, M. (2020)
A proposal of an alternative primer for the ARTIC Network’s multiplex PCR to improve coverage of SARS-CoV-2 genome sequencing - Itokawa, K., Sekizuka, T., Hashino, M., Tanaka, R., and Kuroda, M. (2020)
Disentangling primer interactions improves SARS-CoV-2 genome sequencing by the ARTIC Network’s multiplex PCR - Maitra, A. et al. (2020)
Mutations in SARS-CoV-2 viral RNA identified in Eastern India: Possible implications for the ongoing outbreak in India and impact on viral structure and host susceptibility - Hartley et al. (2020)
Genomic evidence for a case of reinfection with SARS-CoV-2 - Tillett et al. (2020)
Genomic surveillance revealed prevalence of unique SARS-CoV-2 variants bearing mutation in the RdRp gene among Nevada patients
DNA-seq
- Xu, C., Padmanabhan, R., Reinecke, F., DiCarlo, J., and Wang, Y. (2020)
Predicting primer and panel off-target rate in QIAseq targeted DNA panels using convolutional neural networks - Zou, D. et al. (2020)
Circulating tumor DNA is a sensitive marker for routine monitoring of treatment response in advanced colorectal cancer - Paul, D. et al. (2020)
Phylogenomic analysis of SARS-CoV-2 genomes from western India reveals unique linked mutations
RNA-seq
- Legøy, T. A. et al. (2020)
Encapsulation boosts islet-cell signature in differentiating human induced pluripotent stem cells via integrin signaling - Coenen-Stass, A. M. L., et al. (2018)
Evaluation of methodologies for microRNA biomarker detection by next generation sequencing
Multimodal sequencing
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Keup, C. et al. (2020)
Multimodal targeted deep sequencing of circulating tumor cells and matched cell-free DNA provides a more comprehensive tool to identify therapeutic targets in metastatic breast cancer patients
Epigenetics
- Vos, S., Nawrot, T. S., Martens, D. S., Byun H. M., and , B. G. (2020)
Mitochondrial DNA methylation in placental tissue: a proof of concept study by means of prenatal environmental stressors -
Yu, M. C. et al. (2020)
Differential hypermethylation of the VTRNA2-1 promoter in hepatocellular carcinoma as a prognostic factor: Tumor marker prognostic study -
Fleckhaus, J. and Schneider, P. M. (2020)
Novel multiplex strategy for DNA methylation-based age prediction from small amounts of DNA via Pyrosequencing
All photos taken prior to COVID-19