How do I know if my Hi-C sample is a good candidate for deep sequencing?
Prior to costly deep sequencing, users are advised to sequence Hi-C NGS libraries at low depth (<1 million reads) for quality control purposes. Low-depth sequencing data can be processed with the EpiTect Hi-C Data Analysis portal at www.qiagen.com/DataAnalysisCenter, and the sequencing report can be used to assess the quality of Hi-C libraries.